PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G219100.1
Common NameB456_009G219100, LOC105767479
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 385aa    MW: 42281.8 Da    PI: 4.4887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G219100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-103023421055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gorai.009G219100.1 302 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 342
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14292358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-12297352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-12301346No hitNo description
PfamPF000101.5E-7302342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MESVAAFHDG PWDSFNIMFS NEDHLDFTHQ VLNQFSFPLE HDERLSFINP STFAPNLEAD  60
MSIAGVSQSL FSSSNALDSH FHYKTQESNQ SSNSSSNTFV PLPNYETSFL GGSSHMAVTN  120
DITMSLDIQM DIGGGSDKIT DSFPPAFPNI AMDDTVNVIE DSSTDCLPKL DGGYPADSAV  180
LADEILLKRQ FDVLELHDEG DKISTYSSET TKKRPRVSKD AAKAWNNVQL KKNNLNGSEE  240
STIGSDGQSS STSSSDDDNV CRDTNEVALA TSDPKASQAV DLNGKKRASR GSATDPQSLY  300
ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DELWMYAPIA  360
YNGVDIGLND KICTLLLPSK MQLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304KKRASRGSATDPQSLYARKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442484.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A0D2TTM00.0A0A0D2TTM0_G
STRINGPOPTR_0002s12000.12e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2002446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-42bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]